Create phenological events (onset/diapause/mortality)

Generate onset, diapause or mortality manually to be able to run phenology() with observed or arbitrary inputs.

Usage

create_onset(
  template,
  doys = NULL,
  stations = NULL,
  dates = NULL,
  .quiet = FALSE
)

create_diapause(
  template,
  doys = NULL,
  stations = NULL,
  dates = NULL,
  .quiet = FALSE
)

create_mortality(
  template,
  doys = NULL,
  stations = NULL,
  dates = NULL,
  .quiet = FALSE
)

Arguments

template: SpatRaster or data frame that determines the spatial and temporal extent of the result. If a single-layer SpatRaster was passed, the temporal extent should be defined by using dates.
doys: Numeric vector, (multi-layer) SpatRaster or data frame that specifies the days of year when the event is triggered. Vectors will define the events globally whereas SpatRasters allow spatially explict definitions. For the creation of events based on stations, data frames are used. In that case, the field station specifies the station name and doy indicates the respective day of year.
stations: If template is a SpatRaster and doys is a data frame, stations should be passed to define which cells are affected. See stations_create() for details.
dates: Dates to define the temporal extent of the output if template is a single-layer SpatRaster.
.quiet: If TRUE, messages are suppressed.

Value

A logical multi-layer SpatRaster. Each layer represents one date.

Functions

create_onset(): Create a onset.
create_diapause(): Create a diapause.
create_mortality(): Create mortality events.

Examples

# \donttest{
# load sample data
d <- barrks_data('stations')

# create onset, diapause, mortality
on <- create_onset(d, lubridate::yday('2015-04-15'))
dia <- create_diapause(d, lubridate::yday('2015-08-15'))
mort <- create_mortality(d, lubridate::yday('2015-11-15'))

# claculate phenologe
p <- phenology('phenips-clim', d, .quiet = TRUE,
               .onset = on, .diapause = dia, .mortality = mort)

# plot development
plot_development_diagram(p, .lwd = 4)

# }