Function reference • barrks

Main Functions

phenology() bso_phenology(): Central function to calculate a phenology

model(): Get a phenology model

model_combine(): Combine different (sub-)models

list_models(): List all models

params(): Get model parameters

bso_translate_phenology(): Translate BSO generated phenology

save_phenology() load_phenology(): Save/load a phenology

stations_create() stations_assign() stations_names() stations_cells(): Work with stations

Plots

plot_development_diagram(): Plot a development diagram

bso_plot_flight_diagram(): Plot a flight diagram (BSO only)

bso_plot_stage_diagram(): Plot a stage diagram (BSO only)

Results

prop_year() prop_dates() prop_first_date() prop_last_date() prop_hatched_generations() prop_filial_generations() prop_sister_broods() prop_stations(): Get phenology properties

get_development_rst() get_development_df(): Get the beetles development

get_onset_rst() get_onset_df() get_diapause_rst() get_diapause_df() get_mortality_rst() get_mortality_df(): Get onset, diapause or mortality

get_generations_rst() get_generations_df() get_hibernating_generations_rst() get_hibernating_generations_df(): Get generations

get_input_data(): Get (preprocessed) input data

bso_get_flight_rst() bso_get_flight_df(): Get flight of individuals (BSO only)

bso_get_individuals_rst() bso_get_individuals_df(): Get individuals (BSO only)

categorize_generations_rst(): Make a numeric generations raster categorical

Create data

create_daylength_df(): Create a data frame of day lengths

create_daylength_rst(): Create day length rasters

create_onset() create_diapause() create_mortality(): Create phenological events (onset/diapause/mortality)

create_suntimes_df(): Create a data frame of sunrises and sunsets

create_suntimes_rsts(): Create rasters that indicate sunrise and sunset

Data

barrks_data(): Load sample data

barrks_colors(): Get barrks default color palettes

barrks_labels(): Get barrks default legend labels