Plot a stage diagram (BSO only) — bso_plot_stage

A stage diagram illustrates the share of individuals that are in a specific developmental stage of a particular generation over time.

Usage

bso_plot_stage_diagram(
  .pheno,
  .station = prop_stations(.pheno)[1],
  .stages = list("white", "brown"),
  .lty = c("dashed", "solid"),
  .lwd = 2,
  .colors = barrks_colors("bso_stages"),
  .labels = barrks_labels("bso_stages"),
  .legend_col = TRUE,
  .legend_lty = TRUE,
  ...
)

Arguments

.pheno: A BSO phenology (see bso_phenology())
.station: Pass a character vector to choose a station assigned to .pheno by its name, or pass a different station. See stations_create() for details.
.stages: List of stages to plot. Elements will be passed to bso_get_individuals_df(). Look there for more information.
.lty, .lwd: Vectors of line types or line widths that are used to plot the different stages. Should have the same length as .stages or 1.
.colors, .labels: Vectors of colors/labels starting from the hibernating generation followed consecutively by elements for the filial generations (not including sisterbroods).
.legend_col, .legend_lty: Manipulate the appearance of the legends for colors and line types. Pass TRUE/FALSE to enable/disable the respective legend. For the customization of the respective legend, a list of parameters for graphics::legend can be passed.
...: arguments passed to base::plot().

Value

None

Examples

# \donttest{
# This may take a few minutes...

# calculate phenology
p <- bso_phenology('bso', barrks_data('stations'), .quiet = TRUE)

bso_plot_stage_diagram(p)

# }